This individual will join the production NGS Pipeline team, focused on the following goals:Integrate NGS QC tools from a third-party providerIngest data from MiSeq, NextSeq, and external providers using consistent processesBuild pipelines for splicing, single cell and DNA variant callingMaintain and refine pipelines throughout the year, adapting them to changing business requirementsRequired technical skills:Linux power userScripting: Python, BASH, JavascriptJava developmentDatabases (SQL variants)NGS pipeline tools: BWA, STAR, GATK, PicardDevelopment toolchain: git, JIRA, CI/CDPreferred technical skills:Familiar with pipeline frameworks such as Snakemake or NextflowHigh-performance computing (Grid Engine)Amazon Web Services experienceDockerExperience:2-5 years of professional bioinformatics software development or scientific researchBS in Computer Science, Bioinformatics or related fields; MS preferredRegards,Gopal KrishnaSpruce Technology, Inc. 1149 Bloomfield Ave. Clifton, NJ 07012Contact: 973-524-7716"Linux power user", Python, BASH, Javascript, BWA, STAR, GATK, Picard,git, JIRA, bioinformatics, MiSeq, NextSeq

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